Snow Owl allows to create and maintain different kinds of reference sets. They are named from the SNOMED CT Release Format 2 specifications, which are described in detail in the IHTSDO’s Technical Implementation Guide .
SNOMED CT is big: it’s the most comprehensive clinical terminology in the world. It’s also been around the block: today’s SNOMED CT has evolved from terminologies first created in the mid-1960s. Growth has come both organically over time, but also by acquisition through mergers of other terminologies. The result is that some areas of SNOMED CT have inconsistent levels of detail. (A favorite example is Atomic power plant malfunction in watercraft, occupant of small unpowered boat injured.)
Therefore it’s often necessary to extract a smaller collection of concepts from SNOMED CT. This is where reference sets come in handy. They are purpose-built mini-versions of the terminology that contain only the terms that are needed in a specific context, for example all terms needed in an emergency department or for cardiologists.
Snow Owl allows you to create and maintain different kinds of reference sets. They are named from the SNOMED CT Release Format 2 specifications, which are described in detail in the IHTSDO’s Technical Implementation Guide .
When working with reference sets you will primarily use the
- Reference set view as an overview of the reference sets in the database, and the
- Reference set editor where the members can be managed. More information about managing members will be given later in this chapter.
Reference sets view
Existing reference sets are displayed in the Reference Sets view on the right side of your screen. The shop icon will make it easy for you to distinguish the Reference set view from other views, for example the SNOMED CT view or the Parent view.
If you want to check out a few reference sets (e.g. mental health, neurology), go to the B2i examples folder in the Reference Sets view.
Reference set editor
Double-clicking an reference set will launch the reference set editor (in the middle of your screen). The icon in the header indicates the type of reference set (e.g. the icon for a simple type reference set).
The reference set editor is pretty easy to understand since it contains components from the SNOMED CT concepts view and the SNOMED CT concepts editor that you are already familiar with:
- The left side of the editor shows the referenced components as a hierarchy. The navigation is similar to the SNOMED CT view: Clicking the small triangles will expand or collapse the tree. Clicking a concept will display more information on the right side. A filter search can be performed by typing a term in the text box. The toggle button in the editor menu allows you to switch the view between a hierarchical and a flat list.
- The right side displays information about a selected concept. Layout and functions are similar to the overview page of the SNOMED CT Concept editor: Clicking the black triangles will expand or collapse the sections, while the blue triangles will open a list with actions (e.g. clone concept) for editing the selected concept.
- Double-clicking a concept will open the SNOMED CT concept editor.
Did you know? Rather than a flat list of all reference sets for a particular type, reference sets are grouped by their parent. This is useful to create a reference set to group several child reference sets for easier navigation.
Different types of reference sets for different purposes
There are three types of reference sets used for creating subsets. They can be easily recognized by their dedicated icons:
- Simple type reference set
- Attribute value type reference set
- Query type reference set
The simple type reference set is a plain grouping of concepts by user preferences. We will show you how to create one later in this chapter.
Attribute value type
An attribute value type reference set allows associating a value concept with the referenced component. It can be used to extend the ontology with custom properties on the concept.
The members of a query type reference set are determined based on a semantic query.
Did you know: Query type reference sets and the generated simple type reference sets can be automatically updated. This is useful when the underlying terminology changes, for example when a new version of SNOMED CT is released. The action can be applied either on an individual intensional reference set or on the entire set of query type reference sets and will refresh all the generated simple type reference sets.
Creating and maintaining reference sets
Almost magic: Creating new reference sets with Snow Owl
The reference set wizard will guide you through the process of creating a reference set. To launch it, pick one of the icons on the main tool bar. Each type of reference set has a different icon.
- New query type reference set
- New simple type reference set
- New simple map type reference set
- New complex map type reference set
- New attribute value reference set
Alternatively, you can right click on any of the main type categories in the Reference Set view. This will will also open the reference set wizard of the appropriate type. It can also be invoked with File > New.
Creating a new simple type reference set: Step by step
As an example, we want to you show you how to create a new simple type reference set.
1. Click the icon on the main tool bar to launch the wizard.
2. Type a reference set description (here: Shoulder Reference Set) and select the referenced component type (here: SNOMED CT Concept). The wizard automatically creates a reference set identifier concept with the title as a description. Click “Finish” to proceed.
3. You may enter a commit comment in the subsequent dialog, then click “OK” to open the Reference set editor.
4. Your new reference set will appear in the reference set editor. The reference set description is displayed in the title. The list of reference set members is empty since there were no referenced components added yet.
5. To add referenced components go to the SNOMED CT View and choose a concept from the hierarchy (here: Finding of shoulder region). Right-click the concept and choose Add concept and descendents to the active reference set from the list. This will add the concept and all of its children to the reference set. If you want to add only this particular concept use Add concept to the active reference set.
6. The concept is now displayed in the reference set editor. The ” matching members” indicates the number of components in the reference set. The small * asterisk in front of the editor title indicates unsaved changes.
7. To save your reference set, use the icon in the main tool bar. The new reference set will also be incorporated in the hierarchy of the reference set view as a “simple type reference set”.
Other ways of adding new members to a reference set
- New member wizard: To launch the wizard, simply click the Add member button. The browse button will give you access to the quick search that you are already familiar with: Type your search term, pick the concept you want to add from the search results, and hit Finish to add it to your reference set. Now the new member will be part of your reference set and you should be able to find it in the hierarchy.
- You can simply drag and drop a concept from the SNOMED CT Concepts view into the Reference set editor, this will add only the selected concept.
- You can also add concepts by using the advanced search function. Right-clicking a result in the search view will allow you to either Add concept to the active reference set or to Add all results to the active reference set.
- You can also use ESCG queries in the advanced search, the results will also be displayed in the search view and can be added to a reference set.